Agentic Research Directory

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A theory-first approach toward using generative AI for humanities research
A-Lab: an autonomous laboratory for the accelerated synthesis of inorganic materials
Academic literature scanning agent (Bitik)
Academic Obsidian archiving rules for Codex/Claude Code
Academic Writer for Pi and oh-my-pi
Academic Writer: source-linked humanities drafting
Ada (self-driving laboratory)
Aeneas
Agentic AI literature-review coursework pipeline (NLP-05)
AI Agents for Economic Research — Korinek guide
AI Behavioral Research: behavioral vulnerability map
AI Bubble Stress Engine
AI Context Project Guide
AI ethics discourse: mixed qualitative and NLP analysis workflow
AI flavor in writing: literature synthesis and bounded prose comparison
AI for Auto-Research: four-phase research lifecycle roadmap
AI Research Digest
AI Research Skills (Orchestra Research)
AI Research Skills — WenyuChiou catalog
AI-assisted history-of-technology research workflow
AI-native laboratory for autonomous biomolecular engineering
AI-Researcher: an autonomous system for end-to-end AI research with Scientist-Bench
AI/ML Questions: AI-assisted item development and measurement
AI4Sarcopenia Literature Daily
ai_radar: AI economics and engineering research radar
AlabOS: reconfigurable autonomous-laboratory orchestration
AlphaFlow: reinforcement-learning-guided multi-step synthesis
AlphaGeometry: solving olympiad geometry without human demonstrations
AlphaKit: bilingual investment-research skills
AlphaProof: olympiad-level formal mathematical reasoning with reinforcement learning
An auditable AI agent loop for empirical economics
archibate agent-skills: C++ and HPC coding guidance
ARIA: causal-aware reasoning for materials discovery
Ario — Auditable Epistemic Framework for AI
Artificial: whole-lab orchestration and scheduling
ASReview: active-learning-assisted systematic review screening
ATLAS.ti AI features
Audited AI-assisted archival research on acid-attack violence
Auto-Empirical Research Skills (AERS)
Auto-TA: Towards Scalable Automated Thematic Analysis (TA) via Multi-Agent Large Language Models with Reinforcement Learning
AutoAurora: student perspectives on AI code completion
AutoGen
Autonomous lab orchestrator scheduling method
Autonomous scanning droplet cell for alloy-coating design
autoresearch — Meridian research-loop prompts
autoresearch-starter: recorded small-model experiment loops
Awesome AI Literature Review: tool-discovery directory
awesome-literature-review: narrative review drafting skill
AwesomeCUA: computer-use agent research catalog
Benchmarking self-driving labs with acceleration and enhancement factors
BERTopic
Beyond Keywords: June15 archival research method slides (Madore)
bibcheck: bibliography checks and human claim-support triage
BioChatter
Biology literature-review notebook: AI query, extraction and synthesis
Biomni
BioSNN-Plug
BirdNET
CausalML
Cellpose: deep-learning assistance for microscopy cell segmentation
ChemCrow
Chemma: LLM-assisted organic synthesis exploration
Chemprop
Chemputation-based literature validation workflow
CLADD
Claude-Light: prototyping laboratory automation and ML workflows
Claw AI Lab: interactive multi-agent research platform
ClawXiv: signed human–AI research archives
Co-Scientist: accelerating scientific discovery with a multi-agent AI system
Codebook Reduction and Saturation
CodePulse-Py: an early LLM-assisted programming-education research process
Codex Prism
Collaborative graph learning: a conceptual research design map
Computational Safety for Generative AI: A Hypothesis Testing Perspective
CORE-Bench
Coscientist: autonomous chemical research with large language models
CoTI: Collaborative Theme Identification Agent
Critical Research Agent: business-research guidance
Crux: PI-approved bounded computational research loops
Cryo-ET Object Identification (wayiok)
CurreChat: university-controlled LLM chat and course-material RAG
Deep learning for drug repurposing: methods, databases, and applications
DeepForest
DeepLabCut
DeepXDE
DeerFlow 2.0: agent harness for research and coding
DerridAI
Detecting reference errors in scientific literature with large language models
DH/AI African Studies workshop archive: reference guidance for supervised archival processing
DiscoveryBench
Draft Detective
DrugCLIP: Contrastive Drug-Disease Interaction For Drug Repurposing
e2er (End-to-End Research)
EconCSLib (Nikhil Garg): AI-assisted paper formalization
EconML: causal machine-learning methods for research
Educational LLM adaptation in German and Swiss German: contextual and governance criteria
Effective self-driving laboratories: speed and adaptability design criteria
Efficient Benchmarking in Production
Elicit
Emission-GPT
Environmental Slow AI: five principles for generative-system design
eScriptorium
Evaluation framework for LLM thematic analysis of clinical transcripts
Evidentia: human-scoped literature claim extraction and disagreement mapping
Fast-Cat: autonomous catalyst benchmarking
FICSAgenticDroneSim
Generative-AI monitoring of pharmaceutical research laboratories
Genomic foundation models: task-first evidence guide
GitLab Growth AI skills for experiment implementation
Guideline-constrained LLM checklist generation and clinician acceptability evaluation
Harness engineering: repository-level coding-agent configuration
HarnessNet
Hierarchical Deep Research with Local-Web RAG: Toward Automated System-Level Materials Discovery
HITL Research Agent: source analysis and planned research workflow
Human-aware robot behaviour for shared laboratory equipment
Human-rights-based responsible AI: a harm-centred research lens
Humanities AI Research Infrastructure
Invisible Hands for Economists
Jupyter AI
k-agents: knowledge-based agents for quantum laboratory experiments
Khmer short-answer grading: human-orchestrated modelling and SHAP research
LabRobFail: failure-analysis benchmark for chemical laboratory robots
LangGraph
LatteReview: configurable multi-agent literature screening
Lean Copilot
LHONOpenClaw research-task coordination
Lit Review: local scholarly search and AI abstract ranking
Literature Meets Data (hypothesis-generation framework)
literature-review-zh: humanities and social-science review skill
LLM research planning: interdisciplinary task examples and constraints
LLM thematic analysis of Italian interviews
LLM-assisted authorship: the senior-author analogy
LLM-assisted inductive thematic analysis of research interviews
LLM-assisted laboratory instrumentation control
LLM-assisted microscopy: translating expert ideas into API workflows
LLM-assisted thematic analysis in empirical legal studies
LLM-Assisted Thematic Analysis Pipeline (Different Minds Lab)
LLM-in-the-loop: Leveraging Large Language Model for Thematic Analysis
Loyalty fraud detection: conceptual ML comparison framework
Machine learning for materials discovery: two-dimensional topological insulators
Malcom: document-context and web-research workspace
Mammography ML review: ROI extraction and classification comparison
MASTER: multi-agent reasoning for materials simulations
MatterGen
MAXQDA AI Assist
MegaDetector
Microsoft Agent Framework
ML-assisted diffuse reflectance spectroscopy: validation-planning checklist
Modern Computational Methods for Drug Repurposing
Molt: agentic reinforcement-learning framework
Multimodal Control of Manipulators: Coupling Kinematics and Vision for Self-Driving Laboratory Operations
Multimodule LLM thematic analysis of digital-health interviews: comparative workflow study
Muse image prompt collection: science-communication example
Neural 3D reconstruction benchmark for laboratory robots
NeuroCortex SRDF
numguard: numerical edge-case testing with an optional LLM repair agent
Onhand: contextual research-paper reader
Ontological Mediation for Explainable AI
openInvest
PANDA: electrodeposited polymer-film self-driving laboratory
paper-litflow: chapter-organized literature extraction
PaperMind AI: paper-grounded reading and chat
PaperoAI / DistillAI literature summarization
Paperpal
PaperQA2: language agents achieving superhuman synthesis of scientific knowledge
Papyrus: embedding-backed research-paper corpus search
Polymer ML model development: representation, cleaning and design workflow
Polymer-Agent
Priorwork: agent-assisted social-science literature reviews
Prithvi-EO 2.0
PySR (including official usage skill)
QualiLens
quallmer
Quantifying the Ease of Scientific Discovery
Radiology Copilot
Rayyan
Research Agent Skills (Kalaris Labs): systematic-review guidance
Research agent: local research notebook and literature brief
Researcher-guided ChatGPT thematic analysis of parent interviews
ResearchRabbit
ResearchZosho
Reviewer Guideline Design for Automated Peer Review
Robin: a multi-agent system for automating scientific discovery
RobotReviewer: assisting risk-of-bias assessment in clinical trial reports
RS-ML-FPGA: survey data and analysis workflow for Earth-observation ML
ScienceAgentBench: task-level evaluation for scientific agents
Scientific Agent Skills: reusable research procedures, including literature review
SciSciGPT
SciSen: sentence-level scientific writing support
ScrapeSenseLLM
scrapeTx
scvi-tools
SDL-Demo: minimal self-driving laboratory light-mixing demonstration
Self-driving laboratory for steering spontaneous emission
Self-driving laboratory process for electrochromic thin films
Sine-Gordon energy-localization prediction
SOSS and Loom: generative AI as an active creative medium
SSH Citation Index Modules
STORM: a framework for source-grounded pre-writing and knowledge curation
STRIDE: stream insight and drift explanation
Stroke-risk category classification — educational ML workflow
Structured prompt engineering for LLM-assisted inductive thematic analysis
SWIF²T: focused feedback for scientific writing
SyMDis
TACIT: theory-anchored qualitative coding
TalkMoves: transformer-assisted classroom discourse analysis
TC-CoNet
Tech Research: AI-assisted reading and digest workflow
The AI Scientist: towards end-to-end automation of AI research
The Rookery: Storm Research skill
TraceableAI
TraceReview: source-matched literature reading and audit trail
Transkribus: AI-assisted transcription for archival research
Trustworthy Agentic AI for Healthcare — research prototype
TSBench: physics-grounded reaction-mechanism evaluation
University AI Compute: academic infrastructure and access reference
Validating literature-derived materials data for AI reuse
Vibe coding a qualitative research provotype
Vision-guided mobile manipulation for self-driving laboratories
WEALTH: advisory capital-consequence research infrastructure
Whats Up Timeseries: ML examples and reading notes
WhisperX transcription notebook for qualitative researchers
WikiStub-Seed: multilingual research-context seed framework
write-science-well: author-directed scientific prose revision
Writefull
Zetetic Agents: evidence-synthesis and research reasoning skills
zotero-llm-wiki: Paper Chat and literature skills
汉典重光 (Handian Chongguang)
讯飞科研大模型 (iFLYTEK research model)